Plotting
--------

.. toctree::
    :maxdepth: 2

    plot_api
    base
    palette

ROI Visualization
==================

cell_map
#########

.. autofunction:: spatialtis.plotting.cell_map

expression_map
###############

.. autofunction:: spatialtis.plotting.expression_map

neighbors_map
################

.. autofunction:: spatialtis.plotting.neighbors_map

community_map
##################

.. autofunction:: spatialtis.plotting.community_map


Analysis Visualization
=======================

plotting.cell_components
##########################

.. autofunction:: spatialtis.plotting.cell_components

plotting.cell_co_occurrence
#############################

.. autofunction:: spatialtis.plotting.cell_co_occurrence

plotting.cell_density
#######################

.. autofunction:: spatialtis.plotting.cell_density

plotting.cell_morphology
############################

.. autofunction:: spatialtis.plotting.cell_morphology

plotting.neighborhood_analysis
##################################

.. autofunction:: spatialtis.plotting.neighborhood_analysis

plotting.spatial_enrichment_analysis
######################################

.. autofunction:: spatialtis.plotting.spatial_enrichment_analysis

plotting.spatial_distribution
###############################

.. autofunction:: spatialtis.plotting.spatial_distribution

plotting.spatial_heterogeneity
################################

.. autofunction:: spatialtis.plotting.spatial_heterogeneity

plotting.spatial_co_expression
#################################

.. autofunction:: spatialtis.plotting.spatial_co_expression

plotting.NCDMarkers
###########################

.. autofunction:: spatialtis.plotting.NCDMarkers

plotting.NMDMarkers
###########################

.. autofunction:: spatialtis.plotting.NMDMarkers