spatialtis.cell_morphology¶
- class spatialtis.cell_morphology(data, area_key=None, eccentricity_key=None, **kwargs)[source]¶
Cell morphology variation between different groups
This function only works for data with cell shape information. The area is calculated using shoelace formula The eccentricity is assume that the cell is close to ellipse, the semi-minor and semi-major axis is get from the bbox side.
- Parameters
data (anndata._core.anndata.AnnData) – AnnData object to perform analysis
area_key (str) – The key to store cell area, Default: ‘area’
eccentricity_key (str) – The key to store cell eccentricity, Default: ‘eccentricity’
**kwargs – Pass to
spatialtis.abc.AnalysisBase