spatialtis.somde¶
- class spatialtis.somde(data, k=20, alpha=0.5, epoch=100, pval=0.05, qval=0.05, **kwargs)[source]¶
This is a wrapper around somde
- Parameters
data (anndata._core.anndata.AnnData) – AnnData object to perform analysis
k (int) – Number of SOM nodes
alpha (float) – Parameters for generate pseudo gene expression
epoch (int) – Number of epoch
qval (float) – Threshold for qval
pval (float) – Threshold for pval
**kwargs – Pass to
spatialtis.abc.AnalysisBase