Welcome to SpatialTis’s documentation!¶
SpatialTis is an ultra-fast spatial analysis toolkit for large-scale spatial single-cell data.
✔️ Spatial Transcriptome (Non single-cell)
✔️ Spatial Proteome (Single-cell)
🦀 Core algorithms implements in Rust
🚀 Parallel processing support
🔋 Highlighted spatial analysis
Cell neighbors search (KD-Tree/R-Tree/Delaunay)
Cell-Cell Interaction
Marker spatial co-expression
Spatial variable genes (current support: SOMDE)
GCNG: Inferring ligand-receptor using graph convolution network
Identify neighbor dependent markers
📦 Other analysis
Spatial distribution
Hotspot detection
Spatial auto-correlation
Spatial heterogeneity
For a quick view of what it’s does, check our the tutorial part.