SpatialTis 0.4.0 documentation
Usage
Getting Started
Multiplexed images to AnnData
Installation
Low-Level API
About
API Reference
spatialtis.config._Config
spatialtis.read_ROIs
spatialtis.get_result
spatialtis.transform_points
spatialtis.transform_shapes
spatialtis.cell_components
spatialtis.cell_density
spatialtis.cell_morphology
spatialtis.cell_co_occurrence
spatialtis.find_neighbors
spatialtis.hotspot
spatialtis.cell_dispersion
spatialtis.cell_interaction
spatialtis.spatial_heterogeneity
spatialtis.spatial_autocorr
spatialtis.spatial_enrichment
spatialtis.spatial_coexp
spatialtis.NCD_marker
spatialtis.NMD_marker
spatialtis.somde
spatialtis.GCNG
spatialtis.abc.AnalysisBase
Implementation
Development Guide
Q&A
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Index
_
|
A
|
C
|
E
|
F
|
G
|
H
|
M
|
N
|
P
|
R
|
S
|
T
|
V
_
_Config (class in spatialtis.config)
A
AnalysisBase (class in spatialtis.abc)
anndata (spatialtis.read_ROIs attribute)
auto_save (spatialtis.config._Config attribute)
C
cell_co_occurrence (class in spatialtis)
cell_components (class in spatialtis)
cell_density (class in spatialtis)
cell_dispersion (class in spatialtis)
cell_interaction (class in spatialtis)
cell_morphology (class in spatialtis)
cell_type_key (spatialtis.config._Config attribute)
centroid_key (spatialtis.config._Config attribute)
Config (in module spatialtis)
E
exp_obs (spatialtis.config._Config attribute)
F
find_neighbors (class in spatialtis)
G
GCNG (class in spatialtis)
get_result() (in module spatialtis)
H
hotspot (class in spatialtis)
M
marker_key (spatialtis.config._Config attribute)
module
spatialtis
mp (spatialtis.config._Config attribute)
N
NCD_marker (class in spatialtis)
NMD_marker (class in spatialtis)
P
progress_bar (spatialtis.config._Config attribute)
R
read_ROIs (class in spatialtis)
roi_key (spatialtis.config._Config attribute)
S
shape_key (spatialtis.config._Config attribute)
somde (class in spatialtis)
spatial_autocorr (class in spatialtis)
spatial_coexp (class in spatialtis)
spatial_enrichment (class in spatialtis)
spatial_heterogeneity (class in spatialtis)
spatial_weights() (spatialtis.find_neighbors method)
spatialtis
module
T
transform_points() (in module spatialtis)
transform_shapes() (in module spatialtis)
V
verbose (spatialtis.config._Config attribute)