spatialtis.cell_community#

spatialtis.cell_community(data, resolution=0.05, partition_type=None, partition_kwargs=None, export_key='community_id', **kwargs)[source]#

Spatial communities detection

Here we use Leiden graph cluster algorithm

Parameters
dataAnnData

The AnnData to work with.

resolutionfloat, default: 0.05

Control the process of partition.

partition_type

The leidenalg partition type.

partition_kwargs

Pass to leidenalg.find_partition.

export_keystr

The key used to store result.

**kwargs

Config for the analysis, for details check spatialtis.abc.AnalysisBase.