spatialtis.plotting.cell_interaction#
- spatialtis.plotting.cell_interaction(data, use='dot', groupby=None, key='cell_interaction', type_order=None, order=True, plot_value='relationship', **plot_options)[source]#
Visualization of the cell interaction analysis
- Parameters
- dataAnnData
The AnnData object for plotting.
- use{‘dot’, ‘heatmap’}, default: ‘dot’
- groupbystr
The key in
Config.exp_obsto stratify the data.- keystr
The key that store the analysis results.
- type_order: list of str
The list of cell type to show on the plot.
- orderbool
- plot_value{‘relationship’, ‘statistic’}
- **plot_options
Pass to
milkviz.dot_heatmap()ormilkviz.anno_clustermap().