spatialtis.hotspot#
- spatialtis.hotspot(data, selected_types=None, search_level=3, quad=None, rect_side=None, pval=0.01, export_key=None, **kwargs)[source]#
-
Used to identify cells that cluster together.
- Parameters
- dataAnnData
The AnnData to work with.
- selected_typeslist of str
Select your interested cell types.
- search_levelint, default: 3
How deep the search level to reach.
- quadtuple of int, default: (10, 10)
A tuple (X, Y), Use a grid that is X * Y to tessellation your ROI.
- rect_sidetuple of float
A tuple (X, Y), Use many rectangles with X * Y side to tessellation your ROI.
- pvalfloat
The p-value threshold to determine significance.
- export_keystr
The key used to store result.
- **kwargs
Config for the analysis, for details check
spatialtis.abc.AnalysisBase
.