spatialtis.cell_interaction#
- spatialtis.cell_interaction(data, method='pval', resample=1000, pval=0.01, export_key='cell_interaction', **kwargs)[source]#
Profiling cell-cell interaction using permutation test
Neighborhood analysis tells you the relationship between different type of cells
Association (1)
Avoidance (-1)
No relationship (0)
- Parameters
- dataAnnData
The AnnData to work with.
- method{‘pval’, ‘zscore’}, default: ‘pval’
- resamplefloat, default: 1000
Number of times to perform resample.
- pvalfloat
The p-value threshold to determine significance.
- export_keystr
The key used to store result.
- **kwargs
Config for the analysis, for details check
spatialtis.abc.AnalysisBase.
See also