spatialtis.read_visium#

spatialtis.read_visium(paths, read_filtered=True, annotations=None)[source]#

Read visium data from visium result folders.

Parameters

pathslist of str or path: Visium result folders.
read_filteredbool, default: True: To use filtered matrix or raw matrix.
annotationspd.DataFrame, default: None: Your annotations on the ROI, for example: if you have two ROI, you can annotate it with pd.DataFrame({‘ROI’: [‘ROI1’, ‘ROI2’]).