spatialtis.somde#
- spatialtis.somde(data, k=20, alpha=0.5, epoch=100, pval=0.05, qval=0.05, export_key='sv_gene', **kwargs)[source]#
This is a wrapper around somde
- Parameters
- dataAnnData
The AnnData to work with.
- kint, default: 20
Number of SOM nodes.
- alphafloat, default: 0.5
Parameters for generate pseudo gene expression.
- epochint, default: 100
Number of epoch.
- qvalfloat, default: 0.05
Threshold for qval.
- pvalfloat, default: 0.05
Threshold for pval.
- export_keystr
The key used to store result.
- **kwargs
Config for the analysis, for details check
spatialtis.abc.AnalysisBase.